NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209090_10029286

Scaffold Ga0209090_10029286


Overview

Basic Information
Taxon OID3300027813 Open in IMG/M
Scaffold IDGa0209090_10029286 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_152 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3173
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (23.08%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)73.2247Long. (o)-150.2247Alt. (m)Depth (m)67
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007055Metagenome / Metatranscriptome359Y
F092712Metagenome107N

Sequences

Protein IDFamilyRBSSequence
Ga0209090_100292861F007055N/ANKETDTDMIWIAIVLTWNPVNYTILKEFTSEIECWNYYDTGVGEIYARENYGTQVLDHQGNKPDKEYMKKHRPPHREYPTRLYKGVDGWTRGLIWLTCDIKQQ
Ga0209090_1002928613F092712GAGGMTTSFGEYFDKHDAIVKAMQNKNKQLNVEWMEAYEKREQLKDYNHRMSIRNPVDTHKI

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