Basic Information | |
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Taxon OID | 3300027813 Open in IMG/M |
Scaffold ID | Ga0209090_10022246 Open in IMG/M |
Source Dataset Name | Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_152 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3701 |
Total Scaffold Genes | 6 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (50.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium TMED214 | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean |
Source Dataset Sampling Location | ||||||||
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Location Name | Arctic Ocean: Canada Basin | |||||||
Coordinates | Lat. (o) | 73.2247 | Long. (o) | -150.2247 | Alt. (m) | Depth (m) | 67 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F042029 | Metagenome / Metatranscriptome | 159 | Y |
F103920 | Metagenome / Metatranscriptome | 101 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209090_100222463 | F042029 | N/A | MLHGNSQAGEHWATYELNGGKIDHEPGPLGKIRVHDDYWNISNEDREWYNYDVRNTIDITNEQLDGLLNLIHDKVDERHKSIAVLLHAKNYHDIWKWSRGLPVLMIRTSIDEWDGNIVSWAAREYNYLMEDDTNNNHSDDNHAWPGVDSIVDAYMAKQQFNNDISDVEGDVILAQSQWSTQQGLDTLWDTVGIEQPDQNWIHQYLEDYTNHQNINKELAEELTNAYNLRRK |
Ga0209090_100222464 | F103920 | GAGG | MPTILDENKVVLFNDPIKMYLFKETEEVKIAFKISDYAVINRQMSQEHFEYILENWNIADGVQGLEYGEGKIWWFHSKFGPRPECVPADFVNINFNRFTFRISVAEMERVVENYYHQKNNRMHWDES |
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