NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209090_10019518

Scaffold Ga0209090_10019518


Overview

Basic Information
Taxon OID3300027813 Open in IMG/M
Scaffold IDGa0209090_10019518 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_152 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3980
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (50.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)73.2247Long. (o)-150.2247Alt. (m)Depth (m)67
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001235Metagenome / Metatranscriptome741Y
F051547Metagenome144N
F060433Metagenome133Y
F071758Metagenome / Metatranscriptome122Y
F102085Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0209090_100195182F051547AGGAGVKSMIDPLLIVTISVIGGAILNTVRGFLGSDETTYDIKKFFGALIVAVFAGIAVAQTLTVAGLGIIEVVLIGLSVGFAVDFAVSKAKKTE
Ga0209090_100195183F060433N/AMEIFEPLLIASLLGIGGALFAFFRKMSATQNDLCETVARLQKTLIILAKAVDRQSNRLHPKTANSELDDLVKELLDKP
Ga0209090_100195184F071758N/AMDEKCKNCKINKYGYTDGQHSIFICFKCGRYDGISGGDNDFIDKINEEPMALLMMIEQKILTPISGV
Ga0209090_100195185F102085N/AMATSIYIFDSDKMFNSIYREHVDDLEHKMPLIDLYVKGQKLWVVTNSNDMKEQPRLDRSIVHFRKDNAKEWIEGDEKLVLHGKVRYNHKKNQLEFFPRKLRKPLLSMRVGRYFGYKKGKCNINYDKRYYDFKNDRMLFILEDKNEV
Ga0209090_100195187F001235AGGALPTELNTNENANDMTKKLWERHQGDEFTKVSNYKEAVCLGCMKVDVAAATIADICGDCAGKKGREPLLAKVCDKYYGLCFFCSKYKFNIEQVNGRFCNTCHTRIAKVTKEYNEKGGFMKTDPFWISMRKKHGKDWKQIMGGYKKSNRR
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