Scaffold Ga0209090_10013944

Overview

Basic Information

• Taxon OID: 3300027813
• Scaffold ID: Ga0209090_10013944
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_152 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4785
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (22.22%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 73.2247
  • Long. (^o): -150.2247
  • Depth (m): 67

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007827	Metagenome	344	Y
F014329	Metagenome / Metatranscriptome	264	Y
F038864	Metagenome	165	Y
F061291	Metagenome / Metatranscriptome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209090_1001394410	F007827	AGG	MKLTNKQKRSVKRRVQLEQGVSTPGTRVFVSKKLYTRKIKHKNEDK
Ga0209090_1001394411	F038864	N/A	MKINKKLIVAVLELYKLDIVNREIKEHDQSLELLIKVNEQIKLIKDYKLNTNQNG
Ga0209090_1001394417	F061291	N/A	MKTKNELEQAIVMHEEALESSRHSVVVDTQDLEQAKKDLASFNKPELTGSQLDDIQEAIESAVGNFDFDDSDNYNKEFELDYDGRVQLSSLEFENAQELVEAIVEKVHALFVEAEASEL
Ga0209090_100139444	F014329	N/A	MRDYSITKKKDEWYDTQVTDKYGVTHQNYFETQLESEEWIYYIFENEKKPLTKDQEMDMLANAIWGCTKLDEKLGLLKGNEDNLD