Scaffold Ga0209090_10013067

Overview

Basic Information

• Taxon OID: 3300027813
• Scaffold ID: Ga0209090_10013067
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_152 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4953
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 73.2247
  • Long. (^o): -150.2247
  • Depth (m): 67

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024651	Metagenome / Metatranscriptome	205	Y
F043937	Metagenome / Metatranscriptome	155	Y
F071656	Metagenome / Metatranscriptome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209090_1001306713	F024651	GGA	MYNNATFVDKEQLKNLKKMDTFVKDNMDRFNGTGEQIRELITKIEKKGHYYEAEADVLNMIGEEYNQWRKEKR
Ga0209090_1001306717	F071656	N/A	MTDHEELSKQLHETQMANKSYRNLPQRIMMKRWEECGRDVHKFWNTIEWDSTWLKHDTDEERYAKDVTREYNRHPFKEYIKKPKEYIDY
Ga0209090_100130676	F043937	AGAAG	MEKTFKFADLEFKVWEYKPLTIGLWRPYNVEVGFIEDYIKRSGYENDLTILF