Scaffold Ga0209090_10002593

Overview

Basic Information

• Taxon OID: 3300027813
• Scaffold ID: Ga0209090_10002593
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_152 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11389
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 73.2247
  • Long. (^o): -150.2247
  • Depth (m): 67

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033111	Metagenome / Metatranscriptome	178	N
F094410	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209090_100025931	F094410	N/A	NNGFMPFVPHVTQEHAAEHHGLEYTNFQEHYVDMYTSWMFTQSYSDVLKSQTQEFVDNAPHRYYQYEMRTIKQAGFDIKPTTNKLIGIERLKSHFGHDKYDKELRQRLVPFSPLTLKYASLQYTVKVDTKLKEMLEAYYETNFEFLNKLF
Ga0209090_1000259311	F033111	GGA	MRNQLPYYFEVPEMPEIPFDVSQYYIPAEDRLVAQEDKKNLDDIQGMKNRSQSANWYQSYMNVEENSRGQNKRDFKEVNLYEEVDFELTKRMKEFLGDTLHLRFNSILMLRTPANCNSRWHCEGPVFHTRQCALNFPVFGDADVMEGQWATFPRFKDIPARENEKMGFVTKTDMENTEILCKWDKPSMPAFYNTMIFHRGMNEHSNIDRVVLSCAVEDFSDINVVHRKYSTGKLFK