Scaffold Ga0209090_10002401

Overview

Basic Information

• Taxon OID: 3300027813
• Scaffold ID: Ga0209090_10002401
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_152 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11839
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (8.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 73.2247
  • Long. (^o): -150.2247
  • Depth (m): 67

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004489	Metagenome / Metatranscriptome	436	Y
F041241	Metagenome / Metatranscriptome	160	Y
F071292	Metagenome / Metatranscriptome	122	N
F071656	Metagenome / Metatranscriptome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209090_1000240111	F071292	N/A	MKVYIIIAFNKADFYPVGVCDNLIIAKQYAQREFKERAKSHRIYVYEKTMNAPQLMEDKIVYKL
Ga0209090_1000240120	F004489	N/A	MANPIVCIEAINNVRTSVQGNDPRTWMKACAIETLLKGKSGKHFKNCLIGKMESTAEHIQDPAGYADELYNKIKGACSN
Ga0209090_100024015	F071656	N/A	MNHEELSVQLHKNQMANKSYRNLPQRIMMKRWEDCGRDVYKFWDTIEWDSTWLKHDTPEERYVKDVKREYNSHPLRNWIKKPKVLIDNEIE
Ga0209090_100024019	F041241	N/A	MKLDFRNRVSYTITKVTEPATFDSDDFRNAVPPYKGETKEDFWEYMNDNLCDWEAQQYIEDNADILSEELLDLLYEVFEAYPSEVMFDSRTKSEEMVMEAGKIDELYTKYAGFNVEYSND