Scaffold Ga0209090

Basic Information
Taxon OID	3300027813 Open in IMG/M
Scaffold ID	Ga0209090_10000005 Open in IMG/M
Source Dataset Name	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_152 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027813 Open in IMG/M

Scaffold ID

Ga0209090_10000005 Open in IMG/M

Source Dataset Name

Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_152 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	161923
Total Scaffold Genes	179 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	28 (15.64%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

161923

Total Scaffold Genes

179 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

28 (15.64%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	(Source: IMG-VR)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales

(Source: IMG-VR)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location Name	Arctic Ocean: Canada Basin
Coordinates	Lat. (^o)	73.2247	Long. (^o)	-150.2247	Alt. (m)	Depth (m)	67
Location on Map

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Source Dataset Sampling Location

Location Name

Arctic Ocean: Canada Basin

Coordinates

Lat. (^o)

73.2247

Long. (^o)

-150.2247

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F045767	Metagenome / Metatranscriptome	152	N
F068848	Metagenome / Metatranscriptome	124	N
F081877	Metagenome / Metatranscriptome	114	N
F084833	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209090_100000055	F068848	N/A	MGMSNNKDAETKYGMLFKFMNQSRSNYMGLDLTYDYELLPENRISVDIFAEGNFDLPLRTKQMFRNMFMEFFVKDSKYFNIPKSTVGLLDFNNISLNGERLGDRITIDDNLKKDLVDVESKLKKYYSIDLPDYPQGLYRLESFDNVLETYIEIVDADSLMYTTNINDTKKITLNGNEFNRNTIVDFLDSVDLGSSTGNMLVYPDSIFEYISNSVWETSVEGDGASLELFWDKLMSNGMNYQNYFMENIGMLSLVNLRSYVGMFNDDTHNYNTESQSEILSIFVGWLETNKGKYKL
Ga0209090_1000000555	F081877	N/A	MNTKKDMEFKSEEEFNRVAKKAVQILLYVVESKSPILRKLRATNFTSKIYGANQNGVVYFEIEVPFTVDDPDHGPFCNELDKILSGIQNTFGNYHLNSNVEFVLKTEEGDDMIGFLNSCSFDWTDHEDEYNGKANYGFEYNWSSID
Ga0209090_1000000576	F045767	N/A	MFGKNKINKMGIKDSIRKNIQILQEEKKVTLTEEKIVKGRFSMVPKNINKHSTIQNNKTFNVLFNEIRVLKSHGINQKLINENLVQVLSQMFDEEGPRFLDVVKEKLAQYLKSKLQLTDIEQEILVSAIGNTEMDEVSELFNDPRFLAQKISQAYSEDMGGKYSMVNMDNSQEMVKKLEDTFVDKLKPVIGDVNSKMELKLKDIRDNMLS
Ga0209090_1000000581	F084833	N/A	MKKILLILLTLISIVSHSQNLDEIQRHLLNLVNEERSNRGLSTFVTDTLINNGTKIQANYLSTIRSYKQVSHTNPDLKYKTASDRIKIASDSKYGISSENVTAFTYHSSKTDLEIATQAHNNFMNSKYHKMNVLTENGDYFNSGTISPRYYGHYVVYNKKLNAIIVVQMFPRLNYN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209090_10000005

Overview

Ecosystem & Geography

Associated Families

Sequences