Scaffold Ga0209656_10080567

Overview

Basic Information

• Taxon OID: 3300027812
• Scaffold ID: Ga0209656_10080567
• Source Dataset Name: Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1752
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location

• Location Name: Calvert Island, British Columbia, Canada
• Coordinates
  • Lat. (^o): 51.62
  • Long. (^o): -128.09

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000512	Metagenome / Metatranscriptome	1064	Y
F000739	Metagenome / Metatranscriptome	913	Y
F018046	Metagenome / Metatranscriptome	237	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209656_100805671	F018046	GAGG	MPVVGSSAYNTAGQITSLVRSLLNDAAGNLFTDTVLLPYAN
Ga0209656_100805672	F000739	GAG	MTVIRLWLKGLLAAAISGAAGGVLTGFAAVGIDPQHFNLQTGMAATLHIGEAAALINAIIGVAAYLQKSPLPE
Ga0209656_100805674	F000512	AGGA	LRPRKKAYSGCAHVVILRETHDPPPQVAERLLRAGGINRVGEANYRAVWGWNRLAWIGGKFEDRDADGNLLREVVELRREPKYPAVNRWHIERWMPPESYGSPRQWYAQTLERENGVCVPALGPFPYRGDYEHCFTLQGPRGEFVQLTAAAAEHIAHAIEWSRKAPRVVGKRRLADRSAREEQHYDKWAYDVLDDSVPAFHEQPFVTVL