NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209656_10019909

Scaffold Ga0209656_10019909


Overview

Basic Information
Taxon OID3300027812 Open in IMG/M
Scaffold IDGa0209656_10019909 Open in IMG/M
Source Dataset NameBog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4112
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (42.86%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Puniceicoccales → Puniceicoccaceae → Coraliomargarita → Coraliomargarita akajimensis → Coraliomargarita akajimensis DSM 45221(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location
Location NameCalvert Island, British Columbia, Canada
CoordinatesLat. (o)51.62Long. (o)-128.09Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004826Metagenome / Metatranscriptome422Y
F007991Metagenome / Metatranscriptome341Y
F072699Metagenome / Metatranscriptome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0209656_100199091F007991N/AMSRLGFLCFAYLFFALPTLRAAKIDNRNFAIDTFYPTQNEIRLAEQRARNYWAKHAARFGSNPVYLAVEASKIFPGEVQDLWSKLINSETTGSFFSRGPDQQTYSSLELVGIMIFDTRTGRSVGNRGFISVDTPPLGRVARFDGYIARYIGFGNWG
Ga0209656_100199092F072699GAGGMEDHLNRRNCTIMRRMFRLICFLLLVQVPMLVAQKVDLRNYVIGGYDPNPNEIRLAQGRAHAYWQKNGARFGEKARYLALEAASVMPGDVIQPLWQNMINAETGSGFLLPSAWNPGDMHCFMIYDTRIGNFVSKHGYLVFELPRRETFARFGDYIALYIRPGIFW
Ga0209656_100199093F004826N/AMFGCAETDTVDNRNFAIDTCSPTQNEIQLAQGRAKSYWAKHASSFGPESRFLAVEASRPFPDEIQDLYQKLINSQTTASFFGQGGDYSELDLHGIVIYDTKAGQFVSNQGYVCVDIPARGSVARFGPYMARYIGWG
Ga0209656_100199094F007991GGAMKPIFLLSFCTIMLGCAERDSVDHRNFAIDSYYPTPNEIQLAEQRARSYWAKHAERFGSNPVYLAVQTSKIFPSEVQLLWPKLINSETTASFFSQRRGGFSNLQLKGIMIFDTRTNDFVGNRGFISVDTPPLGRVARYDDYIARYIGFGNWG
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