Scaffold Ga0209656_10019649

Overview

Basic Information

• Taxon OID: 3300027812
• Scaffold ID: Ga0209656_10019649
• Source Dataset Name: Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4143
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Magnetospirillum → unclassified Magnetospirillum → Magnetospirillum sp. ME-1 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location

• Location Name: Calvert Island, British Columbia, Canada
• Coordinates
  • Lat. (^o): 51.62
  • Long. (^o): -128.09

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006039	Metagenome / Metatranscriptome	383	Y
F032401	Metagenome	180	Y
F068176	Metagenome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209656_100196492	F068176	N/A	MTRRLRENPMSPQIAQAFLDGLPGMRAALRANRHILGPVVYARHMHELDADEHDATAILRRAQLRIVAGTAFSE
Ga0209656_100196493	F032401	AGGA	MKAMKLAEVRKHTGRRLTVEEAAQYISPGQSATATRNQARALSLHSWLNSATDWLRLEACLVLLADKRRQK
Ga0209656_100196495	F006039	AGGAG	MPNFVIERQYLVPMCQHIVVEAENLDEACKKAVSDDIDWDTQEMDSDSARATTITEAKMVPEGYEADQTHSLIIASRDPKGLPLDMLSLATFLYENEAKTGPLLEIPAKFTDDE