Scaffold Ga0209656_10018484

Overview

Basic Information

• Taxon OID: 3300027812
• Scaffold ID: Ga0209656_10018484
• Source Dataset Name: Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4287
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location

• Location Name: Calvert Island, British Columbia, Canada
• Coordinates
  • Lat. (^o): 51.62
  • Long. (^o): -128.09

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023387	Metagenome / Metatranscriptome	210	Y
F039510	Metagenome / Metatranscriptome	163	Y
F044049	Metagenome / Metatranscriptome	155	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209656_100184843	F039510	N/A	MDGPGIEEIRDELERLMREQIESLQEQTFLGISEEDLQKEKERLKRIRELSAEFLRVLKRIPPEPS
Ga0209656_100184846	F023387	GGA	MNLKPVHPRPKSHHPELAANPTAGRSPMAKRRSNRMALHASVGLSGEDRQKCSFTTPAKATKLNKHGAAVQLSRELLVGSVVSVNNKQGTKVSARVVAQLSALEGVSTYAIEFVEQDERAETFWGINFPPNTSNA
Ga0209656_100184847	F044049	N/A	AQTGTKSYCAFDDGVIRQQVAGTTTVVGGYGACQALLPIAN