Scaffold Ga0209656_10013759

Overview

Basic Information

• Taxon OID: 3300027812
• Scaffold ID: Ga0209656_10013759
• Source Dataset Name: Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5050
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (63.64%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location

• Location Name: Calvert Island, British Columbia, Canada
• Coordinates
  • Lat. (^o): 51.62
  • Long. (^o): -128.09

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007131	Metagenome / Metatranscriptome	357	Y
F027951	Metagenome / Metatranscriptome	193	Y
F054186	Metagenome / Metatranscriptome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209656_100137593	F027951	GGGGG	VTGRPVLRVIDGDGEPEDPVVRRQRFERAHPEAVILPPSGGRWRAVVPAGLIPGDGTSTTLGSWDLDGLMDQLDAIYPDDSRGTPSLPDRKA
Ga0209656_100137595	F054186	N/A	MPGLPSGAFDMLVRTLARICDDPYDPVFSTPVPPVPGRRVADLADFGFIEFIADEAEQLVRVYYLVWTG
Ga0209656_100137597	F007131	AGG	MRLGVSRETVRRLAIAGALPHTVVCGGARKTTRRFPRRFADDFAASGLDADGLAAFAAAWRARVTAPAR