Scaffold Ga0209656_10012842

Overview

Basic Information

• Taxon OID: 3300027812
• Scaffold ID: Ga0209656_10012842
• Source Dataset Name: Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5243
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location

• Location Name: Calvert Island, British Columbia, Canada
• Coordinates
  • Lat. (^o): 51.62
  • Long. (^o): -128.09

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000995	Metagenome / Metatranscriptome	810	Y
F013554	Metagenome / Metatranscriptome	270	Y
F050696	Metagenome / Metatranscriptome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209656_100128425	F000995	GGA	MMPKTDSRAGPTAGRVHRLPADGPLPDLSLYERLIDDGIAAAEGRGSTVDHLTARRLAIWLAARPQAPVFAQGLVRFTQTGAISPALKTQLRIHARSGNYPDRPQAATLMEYCTGRGTDLGPVGENFGRACDQIDRADVMLAGLRERARQGHGLPEQAWPETDGPRIIALARQDPDSGTVSLLLDANTANTVLFAIAAHADEREAHVREVEQFGQSLPEGSYGRRNRQAIAARETRVATRLRAVEQACRTASERDIVVRPPEPASACRSPEHAPDREMELE
Ga0209656_100128427	F013554	AGGAGG	VTTRGRTPDEPGTRRQPDGPHVPAQRPGDKDMRERQDPYDLPFPDSSGRRPPGRPEYVIVVDQLRGWQPGQPPSLAELLETRPARTREPEPDLEAEP
Ga0209656_100128428	F050696	N/A	KIWGTSIAADCKRDRAELCADCPDQSCPACQTRLHDARAYDQIADRMLQAADAAPAPHHRQGEPASKPRQPRLAADKEAGQ