NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209656_10001455

Scaffold Ga0209656_10001455


Overview

Basic Information
Taxon OID3300027812 Open in IMG/M
Scaffold IDGa0209656_10001455 Open in IMG/M
Source Dataset NameBog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15463
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (94.44%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location
Location NameCalvert Island, British Columbia, Canada
CoordinatesLat. (o)51.62Long. (o)-128.09Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001010Metagenome / Metatranscriptome807Y
F001432Metagenome / Metatranscriptome696Y
F002004Metagenome / Metatranscriptome605Y
F006683Metagenome / Metatranscriptome367Y

Sequences

Protein IDFamilyRBSSequence
Ga0209656_1000145510F006683GGAGGMNKPDRADLRQVHVRVNGITFESVRLRHDLGANDFDIVIDDPHVGRFALTAVVPDLELRDGDSEWQRVTLDELKKVLAADGELAEASEEPQASETAERESFNRLVAEGEHIMNAEIALFRAGIPFLQLPFQQNKFASNLFMVSSVSKAKSCLQRAGFQAKFDSETVLFDGRNGQAVQLLQGKYRLPRTNS
Ga0209656_1000145515F001010GAGGLLVYLYNTEEMAVTIEMQNTGDPRARREILAGVEHVLSDVAGEWRVSIVGSRADDNWEMKVEGPQGFERSYTLVGKAGEHKPEAIRNVLIKLLPPRLR
Ga0209656_1000145516F002004GAGMKKIPNSNRNLNEHILRALNKIRKPSTAVEITELLNRDLDLEDRPFQAKDVAEWLRNTEDTALTLYWSRARPRK
Ga0209656_100014558F001432GGAGGMSLDKEFIRDGKRRIIGSVTSGFSDESAVVRDEDNKLSGRTSERYDTTRDDHGNLVSINSADAGLLLGRRK
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