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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027812 Open in IMG/M |
| Scaffold ID | Ga0209656_10000243 Open in IMG/M |
| Source Dataset Name | Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 36657 |
| Total Scaffold Genes | 41 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 40 (97.56%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (100.00%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Calvert Island, British Columbia, Canada | |||||||
| Coordinates | Lat. (o) | 51.62 | Long. (o) | -128.09 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000272 | Metagenome / Metatranscriptome | 1408 | Y |
| F000801 | Metagenome / Metatranscriptome | 886 | Y |
| F004586 | Metagenome / Metatranscriptome | 432 | Y |
| F015363 | Metagenome / Metatranscriptome | 255 | Y |
| F016510 | Metagenome / Metatranscriptome | 246 | Y |
| F075195 | Metagenome / Metatranscriptome | 119 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209656_1000024310 | F004586 | AGGAG | MTTTQQTKCAHLPCKCVARPDDKYCGQACKEAGSGEVEIACQCDHGTCPLTV |
| Ga0209656_1000024311 | F075195 | AGGA | MGTCSDRCAKIRDLGFTASKQIKMYGERFEIVSDPFDEGDCIAVQATSGGDPVVRTVRLPIAILVGLADRFLKRPGAPATTTL |
| Ga0209656_1000024317 | F016510 | GGA | MPHYVRMKSKELTLKQILSVRCMTCGAAVGEACELHTGAPRTEPHRDRKLSAAEAVENETGKG |
| Ga0209656_1000024318 | F000801 | GGAGG | MASQAWTVKELIEALKKFPPEAPVYYEMGPNGPGTIRKAQYVRAYGEDDEMGVLLDR |
| Ga0209656_1000024324 | F015363 | GAGG | MRTCRFALVFGLLAVAACVPLAPSAFGQIQSTISCPAGHGYWDVLSVMMMDPGLASSYHMEGITNGLPSSYVYTIWDQSQTKVYYVKNPQGNPWDINLYDSNYIYQWVTELGDWNGANHWNDPTSCRKLNNGSQKSTADFSMRWAARCVAPGGANSSFWNSPPPSSSNNTNYFTYVAQALQSHAQNLNYAFLEVETTSTMTITDHRANPPESFSITTLPLQYTYSCSVSGNVNSCQSREVFDYGVDTNVNPVDRVQHSYGWVRWRYYTNSTKGNPKAAPVWVLANTSTSDHLMPGEVNINFQCF |
| Ga0209656_100002434 | F000272 | AGGAGG | MSQTVMDRTAEHIAESARQASRATSAVADAIEDGVGVVRRAAKQGGDAAEEFLNDTTQRIQRHPVLTVATTFAMGFTAGALLGWMIKRK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |