NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209656_10000049

Scaffold Ga0209656_10000049


Overview

Basic Information
Taxon OID3300027812 Open in IMG/M
Scaffold IDGa0209656_10000049 Open in IMG/M
Source Dataset NameBog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)79205
Total Scaffold Genes74 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)48 (64.86%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location
Location NameCalvert Island, British Columbia, Canada
CoordinatesLat. (o)51.62Long. (o)-128.09Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003354Metagenome / Metatranscriptome492Y
F005311Metagenome / Metatranscriptome405Y
F005654Metagenome / Metatranscriptome394Y
F006606Metagenome / Metatranscriptome369Y
F008092Metagenome / Metatranscriptome339Y

Sequences

Protein IDFamilyRBSSequence
Ga0209656_1000004920F008092AGGAGMSTPSTTIITNLKTVSVPTANTLAAANSHGIDMPGMLSLALSKASELKVCLTLIVSKMDGADPNLATLNNILASIV
Ga0209656_1000004921F005654GGAMSEDTLLRQRHRAGGERAAAMVQYTARDFQLEVLGKLAEMQSLTESLEESWNEKLEAVKEQRLLKFDSRTLVALGAIGLSLTGYVIQEARNTARQDNEIETTKARVVRLEQISAANTEGRIRMEVQLGELRDGQAEIKAMIEAHYIASKKVVPENRDKSR
Ga0209656_1000004925F005311GGAGGMGNGICGAALVRAANAMLNALGGDQVTLLLPATATASDAAGQLGLVDPGVQNVIIAPVVTQNLPTGNLGPVRRIEFTLPASAIEAQLPTLGMGTAEELFRAALGMMFDGDLFHVEGVVTESFAGTAYFYVVTAVE
Ga0209656_1000004964F006606AGGAGMKRILLILGAAVLFVNTLVIPTVVRADGGGTGGTNCGEKLCKP
Ga0209656_1000004965F003354GGAMTLKSALQDVKETTLAAVSGLLGKLVYLASLRRAQGRYEHWGMELVHGPESSERALKTAHSEVIAGVLRMPLASLVEDLEASSGATGVTAQAYVDGMRARFEDLLPGDRQAPAASHLNSVLLALSMLEKNRGRATRSIS
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