Scaffold Ga0209656

Basic Information
Taxon OID	3300027812 Open in IMG/M
Scaffold ID	Ga0209656_10000031 Open in IMG/M
Source Dataset Name	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027812 Open in IMG/M

Scaffold ID

Ga0209656_10000031 Open in IMG/M

Source Dataset Name

Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	101256
Total Scaffold Genes	91 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	62 (68.13%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (100.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

101256

Total Scaffold Genes

91 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

62 (68.13%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location
Location Name	Calvert Island, British Columbia, Canada
Coordinates	Lat. (^o)	51.62	Long. (^o)	-128.09	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Calvert Island, British Columbia, Canada

Coordinates

Lat. (^o)

51.62

Long. (^o)

-128.09

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000214	Metagenome / Metatranscriptome	1570	Y
F009346	Metagenome / Metatranscriptome	319	Y
F013349	Metagenome / Metatranscriptome	272	Y
F037320	Metagenome / Metatranscriptome	168	Y
F074116	Metagenome / Metatranscriptome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209656_1000003110	F037320	AGGAGG	MVSVSIYRHLLRLYPAFHRERFGEEMTAVFGELQAENVSKGMLARGVFYLRETGGVVSGALQEHWRALGGDTVWLWFPTRRFMMRNQFRFPKATAVLMAIILGGVVVAIQKGEAISASLQDAVSPPIGPIHPVHSVLLGGIVMCLLFFYAAGLIGWAILFAMRRSGVHRLAETSAESK
Ga0209656_1000003128	F013349	AGGA	MRVHRTGLCVASVLVFNILAQAVPYAVFPKAGQLPSPDGRFVVRNIDPVAPASEYVGTFHSLFLEDTASGRTRKLCDYVGVAALAWTRNNSLIMTEYLSKHTSRVRIFSADEARDPVVIDQSLLTRLVPVDLRPQIRENDHVFVEASQIEGQMLTLGVWGYGRHDANGFRWRCQYSLLEGSISCQETPASK
Ga0209656_1000003152	F009346	AGGTGG	MLFEEALTLASRDEGFKATVYAMNTLLIHKGIYTQEEFQSLFVEWVEKEQRRKVAEPRRTETSNAYSA
Ga0209656_1000003161	F000214	AGG	MVMKNVYEVLRQKEMELTRLEKEVEALRLVAPLLSEEKEIMSDMGKPALATAVNGPQATARLSVPAPPSIPAPQPVRAAGWEDTAKRWP
Ga0209656_1000003162	F074116	AGGAGG	MRMWNAVLLLAALALGMTMTAAAKDNVMQGTIVSENSVQCGTQAKGKKQTTELMCQEYVIRTDATEYHVRQEKEGHKEMLPVNVPVELTIKKDRAKFKVNGKEYEMLVVSESAATAGGAPAAAPAPAPKP

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209656_10000031

Overview

Ecosystem & Geography

Associated Families

Sequences