Scaffold Ga0209656_10000022

Overview

Basic Information

• Taxon OID: 3300027812
• Scaffold ID: Ga0209656_10000022
• Source Dataset Name: Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 116297
• Total Scaffold Genes: 105
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 88 (83.81%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location

• Location Name: Calvert Island, British Columbia, Canada
• Coordinates
  • Lat. (^o): 51.62
  • Long. (^o): -128.09

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000838	Metagenome / Metatranscriptome	866	Y
F001558	Metagenome / Metatranscriptome	671	Y
F004823	Metagenome / Metatranscriptome	422	Y
F006278	Metagenome / Metatranscriptome	377	Y
F008980	Metagenome / Metatranscriptome	325	Y
F010114	Metagenome / Metatranscriptome	308	Y
F012141	Metagenome / Metatranscriptome	283	Y
F038890	Metagenome	165	Y
F047844	Metagenome / Metatranscriptome	149	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209656_1000002210	F047844	AGG	MPAIAVLLVCVGAFAWGQDSETPSNPLGDLARQTRAQHASAADAKSSKAQELVDDMQQEQEAAANAPTGFTNYNAGDYRLFVPFPFSLEGRDNGGAVLLGSRLGITNTEVVAGNPIPIPADLSDVDLMNVVRQLAGLHGAQAYCSPIKQGSHRAFRCAWQGNPYLLGHVVWGSIEFIVGSNSLVPVMCVSPDDMHSCTIYDNYGHNTCSDRDRQTYGTDQRKVQAAANARIHDEQTTFQMCDQIIYPSIQLKEDIVVHPASISEKPASKTPAAALPATSGTTPAQEAASGESGSQGPSLAELARQTRQAPHDKAQAKLDSAEGTTLAPTGFQPFVLQYCQNPQQCSEASVVIPEKAEVVSRTNGQYIFKAALDGESVMLYAGPADVNAPYRSLTDPDYIRMRDLANANGWSREKPDSVSTQDLTIEGRPALMTRFRYQRDQKRWWIGERVLIENLGKQFLLGCAAPEEHFADAEVVCTTLVNSLRLP
Ga0209656_100000223	F000838	N/A	MLRGAELPVQSEWVIFVIALALVGIFSVTVALLPRSWIAKACKKDRDDAQVFSAPVKMLGGFAAIFYLVAVIAYFAPSRWNFDPQLMLPLCPMYLVKMMFDPSPVAIFFLLAPMNAAVYGSLGLTLAYAWLAFRKPTSS
Ga0209656_1000002261	F004823	AGGAG	MYATKTVNGVPAIQRDGQSVLSVCDQDWEFANWLCALLNELGSKSELLLNEQDWEWLKAIDSPFRRTVQHA
Ga0209656_1000002262	F006278	GAG	MFRAEIQWLASGPTLKLEGRLVADWAEQARCLVTKDVLPKGLIVDLTEVSYVDSVGEQLLKWLASVGAVFVAGSVYAFAVCDRLRLSPMQRIAERRKRQHGSSGKRSSIKHTHPVEAV
Ga0209656_1000002263	F010114	GAGG	MIVELNDDETRLLYNVLLEQAQEHFSYASTSEVAERLYKLAIRFGRPVRELSNTTIA
Ga0209656_1000002266	F038890	GGAG	MFRITAETCHAFTLAEILILVAMNVENNRLASQGRDGSKSAATLREKLSAT
Ga0209656_100000228	F012141	GGAG	MSGERYWVWLVVRLAVAVAIVGWAASYLFTGSGEKEFQKTLEAMKQVHSFRASVTASAGTRHKEMLWEVDCPRDLYHYQWHETDTDIPAMDMTRDEVHFATEEYHRESDGSWSKPRFAREHPPAWFCGALAQGNDNTLMPRIATMIQRGILQKGDKKTVNGVRCREWLVTMKGAPSGLEHDTVCLGLEDHLPYELTVDWLQLRSSFSDYNAPITFDVPDAVVQPTNTLTGSN
Ga0209656_1000002280	F008980	AGGA	MISAANTSFTESAINENVGGVITQHREELEWLANFLLGDEKIAAACVVDACALAESVSPGVQDWLLKWACLTMIQSAVQMQQRRITQLAAAYERRGCIHGGHTALSSDWRDVLVEESSALIFRLDVLSRFVLVICGLQRRSTQQAAVLLGIDRISVEAAYCAAIKSLEVIGCEQFQRQNNLAAVYN
Ga0209656_1000002281	F001558	GAGG	MLRVETQESDGALMCRLEGRLTGAGAEQVRTVTTRCDSKLKLIVDLTEVLFIDAVGEEVLSLFKRLGAQFVAETSYSRDVCERLDLPMVRNKPNMQVPGNSNGKGNHSATERRCR