Scaffold Ga0209656_10000020

Overview

Basic Information

• Taxon OID: 3300027812
• Scaffold ID: Ga0209656_10000020
• Source Dataset Name: Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 120729
• Total Scaffold Genes: 99
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 65 (65.66%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location

• Location Name: Calvert Island, British Columbia, Canada
• Coordinates
  • Lat. (^o): 51.62
  • Long. (^o): -128.09

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002139	Metagenome / Metatranscriptome	590	Y
F018873	Metagenome / Metatranscriptome	232	Y
F056822	Metagenome / Metatranscriptome	137	Y
F064949	Metagenome / Metatranscriptome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209656_1000002038	F064949	N/A	MLLFESLSAGVMAVGVGMAVVLTVVGVYVLIVWPLTFWDLANLGAENYNSWADTVLWSLFAGGSLAGYWCFSGAAFKGKAKTRVPVRPSRARK
Ga0209656_1000002077	F002139	AGGA	MTNRVTYAPHDFQRMCKQAERDHESKKLLVLMERVKRQIAERQNPGAKVEALKPPVGVTTESGVLRLPSRSAPLER
Ga0209656_1000002086	F056822	AGGAG	MSRVNGDKSRYNRVRKQNAAKRMRNRKLLKNADLQAKPVAPAVVSEPKPVVA
Ga0209656_1000002087	F018873	GGTGG	VSAPLVGLPLSALPSKLKNKRVLLLDASATMRDLRAESMRKLGMEVDCAADVSEARSWWRADLYSLVLIDMESEMGRRERFCDDMRRAKPPQQISFLVGKPGYLADAPNADRAPRLPTSEDQAAWGDVKTALAAELPGGVSQRWGILEASRRISAVRSLSHARSQATQDRPVVPRDLETREFKRVAAQSKALETRTLETKPLETRTLDDLLREELQ