Scaffold Ga0209656_10000013

Overview

Basic Information

• Taxon OID: 3300027812
• Scaffold ID: Ga0209656_10000013
• Source Dataset Name: Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 135329
• Total Scaffold Genes: 120
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 75 (62.50%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location

• Location Name: Calvert Island, British Columbia, Canada
• Coordinates
  • Lat. (^o): 51.62
  • Long. (^o): -128.09

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001247	Metagenome / Metatranscriptome	737	Y
F004703	Metagenome / Metatranscriptome	427	Y
F005152	Metagenome / Metatranscriptome	410	Y
F014416	Metagenome / Metatranscriptome	263	Y
F044621	Metagenome / Metatranscriptome	154	Y
F059602	Metagenome / Metatranscriptome	133	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209656_1000001315	F005152	GGA	MKTTLFVLFIFCTAAAFGQAAVLSNQPQVIQSPSHPLHADTHPMATETPLVGGGGYTYAQGERPLWEFGPVSQPTPLGDVARAYRKEKLTAKKAEIVFEKQGS
Ga0209656_100000133	F059602	N/A	MPEIAPHPAPSVPANSPADPLKKPTQPMLALFGSTVNGSTIAAPETKPKEAFAWEKTKGI
Ga0209656_100000135	F004703	GGAGG	MAEKAVTLHQPVISIRISEELRSRLETLKEVIALKTGQTVSTSEAAKQLLESARDDRLELANLLTEPTDSLLKIRGKAEAKLPLSLAEWTLVAYYCAKGAESFTSTEQGQLSYESLAEILEAFLAAYDLVRRQKKSPRDFFYLMTLPEDKQAATKEPAAVGSDDVHRVVKHTIQMLNDSTQKRRRPLLAIRNLYTLLDEEKFSNVEKLNDALLSHWAALWRVCARGHYAAHRKPLRRRPTEGDDDDFELPVQRGLPAQEEAGYRLDLVREKGNEFSPILQFPGPLAPRFPVGGYARIAEFRRMLEGHDMTRPFAQWKGSYFSAINMIMENEELHVSFCARENGISFSFPIEHWKAIRTLFRRTWQAPDVVSAWETLALEYGEM
Ga0209656_1000001368	F001247	GAGG	MKTKTWTVIANTGKQADLESDLERKEVQRPTYISAREFIHWLAPQSRIDDSSLQSLFKL
Ga0209656_1000001369	F044621	N/A	MRHYTIKPMNGFSVFKCPLCKHSVTTRDFSSKDGNCRTQAAGVMNDHAKAVHSRPVSLYSSDMPMWHAY
Ga0209656_1000001373	F014416	GGAG	MPKRVLTDGESAILLIIQEGYGAHNSIDRVYFSPADEAIMFCRLANGMNALMANLSHLAARRADGTIASDDELKKKWLRLRK