Scaffold Ga0209656_10000006

Overview

Basic Information

• Taxon OID: 3300027812
• Scaffold ID: Ga0209656_10000006
• Source Dataset Name: Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 191050
• Total Scaffold Genes: 186
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 129 (69.35%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location

• Location Name: Calvert Island, British Columbia, Canada
• Coordinates
  • Lat. (^o): 51.62
  • Long. (^o): -128.09

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000534	Metagenome / Metatranscriptome	1044	Y
F001318	Metagenome / Metatranscriptome	724	Y
F003708	Metagenome / Metatranscriptome	473	Y
F007325	Metagenome / Metatranscriptome	353	Y
F029207	Metagenome / Metatranscriptome	189	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209656_10000006122	F029207	AGG	MCNATAKATPKEGQRALNRAIFVMLAPPVAIMIFGFGFAMRYGRRRDRENDENHD
Ga0209656_10000006125	F007325	GGA	MLGTRYLRWLWATITLVALVVGAAASSDLSVEELKARLDSTGIGGRPHLCVLIAQKQLEEADKLYAADEVEKGQGALADAVTYAELARDYAIESHKYQKQSEIAVRAMTRKLTALLHSLGHDDQAPVEDAIRRLEKVRDDLLKAMFPKGVK
Ga0209656_1000000652	F000534	AGGA	MPQEISVSYQAIKSKVYRLIDSLVVGEKSEPEVQESIRRWWALIHPADRPIAQKYLLMVLGRSASALDCMGDAFLSVSSCEVARPQLTDVPLPGKRMRLLERVVKESTVRTAV
Ga0209656_1000000667	F001318	GGAGG	MKRWAWLLAIPVLISVAGAQISASLNSQPAPAQGSSSPDSGLDADSGDRMFFPHDMFWGWAQLDLAPPHNEIDPDLCSGNAKQYGGINDPCSLFARYMLSGILEVRPFGRGPLRRFMVYGAPTFLFGKTIPKTLYTWSPDAIGIEHSWGVGIYLNKGFEFRVTQHFLFDRLGARNTYLGPADLGNNGPWGRYVTVGVRKTFGTRRW
Ga0209656_1000000691	F003708	AGGA	MKLMTLILPTVLLLALPVHTTPPAARGVQPEAAITAQESEASALSSQVTIEPGLSIGPLKLGDTRDRVLDLFPKKEEDLEWENRCGTTLDWVDADNRTGHGDLFIRLKKGKVFQIESTTTRFHTAEGITTFDHADKVANAYKDLRAFTLLTTPVPALGDRPLVFWIDKKKGIAFAFAYYPAEHKRYLYKIIVFEPNKTFCPEEETTNSPKWQPIPGYTLEPPPELAPNLY