Scaffold Ga0209656_10000004

Overview

Basic Information

• Taxon OID: 3300027812
• Scaffold ID: Ga0209656_10000004
• Source Dataset Name: Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 229587
• Total Scaffold Genes: 207
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 136 (65.70%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location

• Location Name: Calvert Island, British Columbia, Canada
• Coordinates
  • Lat. (^o): 51.62
  • Long. (^o): -128.09

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000812	Metagenome / Metatranscriptome	881	Y
F002165	Metagenome / Metatranscriptome	588	Y
F003650	Metagenome / Metatranscriptome	475	Y
F029213	Metagenome / Metatranscriptome	189	Y
F048442	Metagenome / Metatranscriptome	148	Y
F065973	Metagenome / Metatranscriptome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209656_10000004127	F029213	GGAGG	MGNRRGLWIGASLLIGGVIIWAVGQAVNPSSGDTEFKKTLESMKQVKSFRGAYIESASSSHSERLWEVDCNRVIVHQQSHDAQASTDSPFEMKDEELLVGDQRYTRDRDGSWENNGSVGPRFSAKWYCDNLARGTVRDLLPDMYTMISHAITEQGDKKTVNGVRCREWKFDVRTALSSQKGSVCIGVDDHLPYEMTTENGGHYSYSDYNRPIQFEAPEAALQPASSTGGSN
Ga0209656_1000000439	F000812	GGA	LPDTASNPVPAPQPDLPGKPRRWSIIAAGLLLLALALVVIYTSRAAFFSPLALVVVAAIGLAALLLELRFRKDVSPRVRAPLWLNVLGLVFAIGAVFDFHFGADLMLVAALGSVICFAISGTAILHALRKKKV
Ga0209656_100000044	F065973	GGA	MTPEDAAAVIERFLGESPDSIEWCDFAETKQQEPRVEEYRKRCDKLSPLVNRPGEMDEAAVAELRSMIEELRSINTSETVKPDVCGERKKVNSDDD
Ga0209656_1000000448	F003650	AGGTGG	MEKWRKARWIPGLVILVACGTACQIEGARAGEQQAAAQDAPAASQEDRGPVIENDSELPDTHPHAPYEFRFRAHGRVSTLHWRVEKGTLPPGMKLEDDGLLHGNAERMGEFQFTVSVTDGGRERAVQKGFVLRVTSALSLQWKAGGHVNGNRIEGSAEVLNTTRDDIDLTFYVLAVASNGRATAIGYQHFVLRPGTKPVELPFGETLPFGGYKVHVDAVGEVAARNLIYREYLETPGLLQVTVGP
Ga0209656_1000000453	F002165	N/A	MSENSDPRIEEILSRHQLDLDRLKEALALLGVISCSWCQKFFRRTDPGALFEADVPVCYGCIHEWWPHRCAQLDVKDREALEGKLVFWLRQYHHAEFFKDPAKLPEASLQELHLVANCLECHGTGKLMDQERCRYCEGRGTVWVIVSRKRG
Ga0209656_1000000459	F048442	N/A	VLDWTAFCPAVSPFPLPGHEVGYLQASPYTLGPFTGRDSHGKLAMGKRMPSDVTANNRRGNRTKAVIPVRVKGQDSDGKPFEELVITLDVTPDGVRLGSVHHQLNLQEELTIFYRQRRNQYRVVWTKKMKGTSEFQVGLQALTQDAEVWGLNFADYKRQPLPQPAVAQPAVVA