Scaffold Ga0209656_10000003

Overview

Basic Information

• Taxon OID: 3300027812
• Scaffold ID: Ga0209656_10000003
• Source Dataset Name: Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 236258
• Total Scaffold Genes: 184
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 154 (83.70%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location

• Location Name: Calvert Island, British Columbia, Canada
• Coordinates
  • Lat. (^o): 51.62
  • Long. (^o): -128.09

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000036	Metagenome / Metatranscriptome	4352	Y
F001520	Metagenome / Metatranscriptome	679	Y
F002979	Metagenome / Metatranscriptome	516	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209656_10000003181	F001520	GGAG	MNGIRFLFAAYIATWVIHGVYLGSLVRRFSRLRQELKEVGKEK
Ga0209656_1000000362	F002979	AGAAG	VKSRSKSEKNTKASPALRMFLVPCSCGTTFAVAENYDHQGTAWSRYLVCPGCGKRHDPKNRLLQMGFHPEGYWTVDQC
Ga0209656_1000000380	F000036	AGG	MAYKETFWMACDSTEQLRAEYGPFHTRAEAEREAKKLGFGYLLRYEHILGESEEIQEVRCIFVELPGAAPVGVEAVPVTLHTRCATCGESAAHEKGWQAEVWADIHEFEHSRHRVRLFEHARGKGLKEIGDWRG