Scaffold Ga0209656_10000002

Overview

Basic Information

• Taxon OID: 3300027812
• Scaffold ID: Ga0209656_10000002
• Source Dataset Name: Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 250984
• Total Scaffold Genes: 198
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 132 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location

• Location Name: Calvert Island, British Columbia, Canada
• Coordinates
  • Lat. (^o): 51.62
  • Long. (^o): -128.09

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000132	Metagenome / Metatranscriptome	1972	Y
F002926	Metagenome / Metatranscriptome	520	Y
F030505	Metagenome / Metatranscriptome	185	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209656_10000002179	F000132	N/A	MAALELLWLISRFQVGPSMLIEKLAAGVVQVETPIGPRYVMPSFLQRVYLLWMFRNFPILPHAVLSRRQQRMIDRMCGEQRFASMAYADGMEEVPVIGTVERRPPVGTADQWSPRRPVTSGAPGLAAEVRQRS
Ga0209656_100000022	F030505	N/A	MPVILFVTVIASVSLGVFAAYAAVICILRAFGHRSQQQAEAGRPRLTLVPTQHHASGD
Ga0209656_1000000259	F002926	N/A	MWRIDPTKWSRVIDRSGQPVASVEADTDPTASASLIAAAPDMFELLQALETDESIPESVHEEIQLVLRRARGDFGLAVFSRNVAKQMRSRTQEWLKFMEGLWTPGDGAE