Basic Information | |
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Taxon OID | 3300027810 Open in IMG/M |
Scaffold ID | Ga0209302_10114708 Open in IMG/M |
Source Dataset Name | Marine eukaryotic phytoplankton communities from Arctic Ocean - Arctic Ocean ARC135M Metagenome (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1344 |
Total Scaffold Genes | 6 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean |
Source Dataset Sampling Location | ||||||||
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Location Name | Arctic Ocean | |||||||
Coordinates | Lat. (o) | 78.8669 | Long. (o) | -3.2286 | Alt. (m) | Depth (m) | 15 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F013232 | Metagenome / Metatranscriptome | 273 | Y |
F015402 | Metagenome / Metatranscriptome | 255 | Y |
F057685 | Metagenome / Metatranscriptome | 136 | N |
Protein ID | Family | RBS | Sequence |
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Ga0209302_101147082 | F013232 | N/A | MSDREIMNSKSGVPMWWKPGISFLKEDWIKHPDLKQFRNKPSWASDCECSSPKLVELWEHDSCVRGRIDTTVCVKCDEVESLSIVR |
Ga0209302_101147083 | F057685 | N/A | MGDHVDSLWKCGCGGLNAGWRTTCGACEEKQIMEKKTPRKDLLKILNTIKEDFVMLQDGSWSLQYSDGTEIEASLDNVDKAIEIVNKNLYGK |
Ga0209302_101147085 | F015402 | N/A | MGRTKDFLGSLDLTEGELNAELYSRGDEDYQYQKWIESPEFAEYVNGEIDSSRPIYSEHDIMSATRYASKQITLEPSEIGKEVYDMLFSEKIEEYLSIERNEL |
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