NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209302_10110838

Scaffold Ga0209302_10110838


Overview

Basic Information
Taxon OID3300027810 Open in IMG/M
Scaffold IDGa0209302_10110838 Open in IMG/M
Source Dataset NameMarine eukaryotic phytoplankton communities from Arctic Ocean - Arctic Ocean ARC135M Metagenome (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1373
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean
CoordinatesLat. (o)78.8669Long. (o)-3.2286Alt. (m)Depth (m)15
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012991Metagenome / Metatranscriptome275Y
F054054Metagenome / Metatranscriptome140Y

Sequences

Protein IDFamilyRBSSequence
Ga0209302_101108381F054054N/ATALAEYILPKVADFGNEDNAERQKIGYYNNKSESLFGELITAGDWYDFDNDGTISSDEKDPGQYNLKRIR
Ga0209302_101108383F012991AGGAMAYIYPAPGVAAAMSTLSLSVNSNGSDSGTTIPALQDVTVNAANDVFTWTQLDSASKLQIATTATNSLGMNLVLEQASFFGSGGDTITVAGLGIWGASAAKTKVDFSLYLGDTDGGATGKTISGSGYITGLSPTVSADSPVWVSPITITVDGDYTVA

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