NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209302_10042091

Scaffold Ga0209302_10042091


Overview

Basic Information
Taxon OID3300027810 Open in IMG/M
Scaffold IDGa0209302_10042091 Open in IMG/M
Source Dataset NameMarine eukaryotic phytoplankton communities from Arctic Ocean - Arctic Ocean ARC135M Metagenome (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2479
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (50.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean
CoordinatesLat. (o)78.8669Long. (o)-3.2286Alt. (m)Depth (m)15
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F048102Metagenome / Metatranscriptome148Y
F050682Metagenome / Metatranscriptome145N
F064106Metagenome129Y
F101904Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0209302_100420912F048102GAGGMLIEKDTKEATSKFFAVADIDARAAAAYTANKQLFNSAQHTTKVELVDSILKTMFIGYATAYQTSRAATKKRAAHTEVKYFRVVTYAQKQHSKLKALAVQQLAALGLDLVYKPRTDSYSVHVI
Ga0209302_100420914F101904N/AMQNLQVHYTYKTKNATVQDLCIVQSKTKRFTKTQQLNTQLKLATQLNLKHFYAVTLTHYSVV
Ga0209302_100420915F064106AGGAGMQTTQNTVTQAQALSHCAQQLQYVTDAANKHTYCINTAQEIVHVLQQLLSANANFAAIVANTRYSSDCVNEEKYL
Ga0209302_100420916F050682N/AMQNTKYENVVIATIENLANSIKLCAHDSVVEKNDYSITDNVQALRFVYANYTQHTSVASLAAAALNSKLDTVVRENVHAQLTFIN

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