Scaffold Ga0209302_10040857

Overview

Basic Information

• Taxon OID: 3300027810
• Scaffold ID: Ga0209302_10040857
• Source Dataset Name: Marine eukaryotic phytoplankton communities from Arctic Ocean - Arctic Ocean ARC135M Metagenome (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2525
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean
• Coordinates
  • Lat. (^o): 78.8669
  • Long. (^o): -3.2286
  • Depth (m): 15

Associated Families

Family	Category	Number of Sequences	3D Structure?
F050682	Metagenome / Metatranscriptome	145	N
F064106	Metagenome	129	Y
F101904	Metagenome	102	N
F103560	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209302_100408573	F050682	GGA	MQNTKYENVVIATIQNLAALVSNAAHDSIVEKNDYSITDNVQALRFVYANYTQHTSVASLAAAALNSKMDTVVRENVHAQLTFIN
Ga0209302_100408574	F064106	AGGAG	MQTTQNTVTQAQALQHCAQQLQYVTDATNKHTYCLNTANELATVIQQLLNTTTNFAAIVANMRYSNDEVNEEKYL
Ga0209302_100408575	F103560	N/A	MLKNKFAFTVINYNTLLIVNSNTQQQRYAHNVTLPSLYAVTQAQLAKLFKTAAAN
Ga0209302_100408576	F101904	AGGAG	MQTLQVHYTYKTKNATVQDLCIVQSKTKRFTKTQQLNTQLKLATQLNLKHFYAVTLTHYSVV