Scaffold Ga0209302_10000295

Overview

Basic Information

• Taxon OID: 3300027810
• Scaffold ID: Ga0209302_10000295
• Source Dataset Name: Marine eukaryotic phytoplankton communities from Arctic Ocean - Arctic Ocean ARC135M Metagenome (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 30239
• Total Scaffold Genes: 57
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (12.28%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean
• Coordinates
  • Lat. (^o): 78.8669
  • Long. (^o): -3.2286
  • Depth (m): 15

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000751	Metagenome / Metatranscriptome	907	Y
F002629	Metagenome / Metatranscriptome	542	Y
F006815	Metagenome / Metatranscriptome	364	Y
F011006	Metagenome / Metatranscriptome	296	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209302_1000029526	F011006	AGAAG	MKKIIDKFLIKRSIRPYKVVPLPTGVIVEHYRNGKLKTEYYGLV
Ga0209302_1000029540	F002629	N/A	MKVNEAAWEKLKKQIEYYTDADTSISDISINYQVKETKNRNYLRLNITIDKWDKITN
Ga0209302_1000029554	F006815	N/A	MGTNFSQETAQTKFDEYTYRIEALCNRIEELKAKIEVSQIFKQ
Ga0209302_100002956	F000751	N/A	MNIYKTNFPTEQEGKDYLLSIGVLVETDNEIVFAKDTAAVVYIGKVVKIPATYDADGNELTPPIYYDGYAIDVMSSLDLDFGAFMVYPIEAAHSFYGYARNAEVPPTKKK