NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209302_10000266

Scaffold Ga0209302_10000266


Overview

Basic Information
Taxon OID3300027810 Open in IMG/M
Scaffold IDGa0209302_10000266 Open in IMG/M
Source Dataset NameMarine eukaryotic phytoplankton communities from Arctic Ocean - Arctic Ocean ARC135M Metagenome (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)32017
Total Scaffold Genes31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (12.90%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean
CoordinatesLat. (o)78.8669Long. (o)-3.2286Alt. (m)Depth (m)15
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009146Metagenome / Metatranscriptome322Y
F061863Metagenome / Metatranscriptome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0209302_1000026616F009146N/AMNMKHEALFERVKNKLDEVVNEEFIKSTKTEKGNTQISERVVIEKIREVLLSLEITFEEAGSQQSKDFRNVGGIGLNIEIKKTDNPVIYFNDTCPTKDIYYVVFFTGKEYKRTPQKNIPPKLLYINGEEFVKDSPWIQDYIEELTALKDKYARGENKKRLAGIMEVYPRPTFKANIAGFLGMKVKEVHTLYNFASKEEDLAMEGLVAMSNDKTNESDDEEVGF
Ga0209302_1000026621F061863N/AMYLNNNLVIQTSIAALLVIFGVVVKNSLEQMKIPNHPIGKPLGMALFIFGWVYTAYILSARKTNKMLFIVPSAFIIGSVIMMKKYMENKQSPPMIYPLLFAISWILLGYGAGNHLSGYMKYFGILASLLVLLSMMMTLPHQRKNCIIDGPGMPLFVIAWIIIVFLNSNR

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