NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209302_10000007

Scaffold Ga0209302_10000007


Overview

Basic Information
Taxon OID3300027810 Open in IMG/M
Scaffold IDGa0209302_10000007 Open in IMG/M
Source Dataset NameMarine eukaryotic phytoplankton communities from Arctic Ocean - Arctic Ocean ARC135M Metagenome (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)175162
Total Scaffold Genes207 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)35 (16.91%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae(Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean
CoordinatesLat. (o)78.8669Long. (o)-3.2286Alt. (m)Depth (m)15
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016325Metagenome / Metatranscriptome248Y
F048336Metagenome / Metatranscriptome148Y
F089411Metagenome / Metatranscriptome109N
F105292Metagenome / Metatranscriptome100N

Sequences

Protein IDFamilyRBSSequence
Ga0209302_10000007114F089411N/AMSQLKIKQIEGLQTKLESIDSQLASGSLKSSYEQAAHGFAAGNVIAFFNGSWVLADSKTADKLGRLVVEEATDDSNFIAVQIGNIEVSTWNLTPGTFYVVDESDSGSISAFVNASDPVYAYSNPVLQAISATKAQVLPWRPSLGPTQVAQGTEYTQADLAPLASNGDESATGITLDYTPFADSTVQVYINGVAVTETYGEKTGDVYFSNNAGITAKSVADLEAGDELFWNSNFAGYEIGGGDLFDIVYEKNSLD
Ga0209302_1000000717F016325N/AMKITIQKVDQTNFINFINRLKVIDSFVYFKIKGGTIQASAYLPQRDAVKHHRLPIGQIFQIEEGSITTTKELKVAFFDAQKLTDAFKQFDYDSIQGEIEFLENDEDFVATSFRIFNDELEIKLACSEPSLGYKDLTDSQISSIFNVDDASFKFEMDYGTLNKVKNLFGLDKEETFSIEANGKGVKLTGNTYNMLVTPDYEGTSGKKVTLFKKYLNLLDKEDYTANVLENRVVMKSNDSETLLTIATCNTGA
Ga0209302_1000000740F105292N/AMQHIRLFEQFVNEAKVDKKYFDKVVKILSKSKYPFTVMLVTKWNEIDIIIGSDAPDYIAEDIDEKLMKAGMTYGGSSGISISGDSSNYSRREYDEIERINGGHKNY
Ga0209302_1000000741F048336N/AMKPVKLFESFINEAVSFDKKGIKAKLEDKVRIAKIAVEKWGSSYEKVLAKAEASAKSGKLPNYKEHLNVQGDIEQDSYDVFQGRNAYQLAEKISKVIKKYKKNEVEQSSTGAAGGYSGTMRSTVGGTIDGRANFSNGNNSYLIAVTCGGGINKSVKDKMFQEIYELMFVLDQYNSSDGGVMINYSTGTNYDTIGLQNSSYSFGRGMADTLKDIMNK

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