Scaffold Ga0209302_10000007

Overview

Basic Information

• Taxon OID: 3300027810
• Scaffold ID: Ga0209302_10000007
• Source Dataset Name: Marine eukaryotic phytoplankton communities from Arctic Ocean - Arctic Ocean ARC135M Metagenome (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 175162
• Total Scaffold Genes: 207
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 35 (16.91%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean
• Coordinates
  • Lat. (^o): 78.8669
  • Long. (^o): -3.2286
  • Depth (m): 15

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016325	Metagenome / Metatranscriptome	248	Y
F048336	Metagenome / Metatranscriptome	148	Y
F089411	Metagenome / Metatranscriptome	109	N
F105292	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209302_10000007114	F089411	N/A	MSQLKIKQIEGLQTKLESIDSQLASGSLKSSYEQAAHGFAAGNVIAFFNGSWVLADSKTADKLGRLVVEEATDDSNFIAVQIGNIEVSTWNLTPGTFYVVDESDSGSISAFVNASDPVYAYSNPVLQAISATKAQVLPWRPSLGPTQVAQGTEYTQADLAPLASNGDESATGITLDYTPFADSTVQVYINGVAVTETYGEKTGDVYFSNNAGITAKSVADLEAGDELFWNSNFAGYEIGGGDLFDIVYEKNSLD
Ga0209302_1000000717	F016325	N/A	MKITIQKVDQTNFINFINRLKVIDSFVYFKIKGGTIQASAYLPQRDAVKHHRLPIGQIFQIEEGSITTTKELKVAFFDAQKLTDAFKQFDYDSIQGEIEFLENDEDFVATSFRIFNDELEIKLACSEPSLGYKDLTDSQISSIFNVDDASFKFEMDYGTLNKVKNLFGLDKEETFSIEANGKGVKLTGNTYNMLVTPDYEGTSGKKVTLFKKYLNLLDKEDYTANVLENRVVMKSNDSETLLTIATCNTGA
Ga0209302_1000000740	F105292	N/A	MQHIRLFEQFVNEAKVDKKYFDKVVKILSKSKYPFTVMLVTKWNEIDIIIGSDAPDYIAEDIDEKLMKAGMTYGGSSGISISGDSSNYSRREYDEIERINGGHKNY
Ga0209302_1000000741	F048336	N/A	MKPVKLFESFINEAVSFDKKGIKAKLEDKVRIAKIAVEKWGSSYEKVLAKAEASAKSGKLPNYKEHLNVQGDIEQDSYDVFQGRNAYQLAEKISKVIKKYKKNEVEQSSTGAAGGYSGTMRSTVGGTIDGRANFSNGNNSYLIAVTCGGGINKSVKDKMFQEIYELMFVLDQYNSSDGGVMINYSTGTNYDTIGLQNSSYSFGRGMADTLKDIMNK