Scaffold Ga0209354_10111570

Overview

Basic Information

• Taxon OID: 3300027808
• Scaffold ID: Ga0209354_10111570
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.DD (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1116
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001897	Metagenome / Metatranscriptome	620	Y
F005503	Metagenome / Metatranscriptome	398	Y
F086582	Metagenome / Metatranscriptome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209354_101115701	F005503	N/A	FIFMVLACILWAICSYAIGYKEGHKDGYQRGKAVGRHASGQAVR
Ga0209354_101115702	F001897	AGGCGG	MAFMDSYEGNKERTDRWIATYPQGRLETHIIEFNAEKGYVLVQAKAWRNQTEIDPAGIDHAHGFLAAYSDKMRRWMIEDTCTSALMRVMALVMGGTEKATKEVMASVKTQTPAADYDYWTTKFGDVPSYKTREEAEEVKDTAWTAETVPGCSHGSMRWNQSKPDAPKPWAGYFCSEKIKEKQCKPQWYVMTSDGTFKPQV
Ga0209354_101115704	F086582	GGAG	MIDRIEEVQCMIAAISHCHDKSADHSSRIVKNLSWFEYVAQMGESMLAEMVVAKRLGYDYEP