Scaffold Ga0209354_10017532

Overview

Basic Information

• Taxon OID: 3300027808
• Scaffold ID: Ga0209354_10017532
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.DD (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2852
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005814	Metagenome	389	Y
F006463	Metagenome / Metatranscriptome	372	N
F009958	Metagenome / Metatranscriptome	310	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209354_100175321	F009958	N/A	LEFWNKGWELTYEFTGWTYSIAGTWEFNDYDEVSEFAFIELDVDVSQKWLTETDDHLQPHLLGVRILEDLRLEMQEIINSDLAHYNFWEWKASNDESNYNFYHEL
Ga0209354_100175322	F006463	N/A	MKAGTIYDQLDWWHRQWRGSFDLGLYLEICRIKKNEQTKFKEMKRYKATFKTWAYVGAPVKLETRIVEAYDIQHVKNLIQKNDDIIIEIKQIEQ
Ga0209354_100175326	F005814	N/A	MELELLSSRINLNHTCLKLQVSIDEIKAKNPNRTDLITSMEQSLYEIKKAMVVYQTLEKEFRATRQINFDLQHLNLELKQ