Scaffold Ga0209354_10002074

Overview

Basic Information

• Taxon OID: 3300027808
• Scaffold ID: Ga0209354_10002074
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.DD (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8588
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (82.35%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000403	Metagenome / Metatranscriptome	1177	Y
F010982	Metagenome	296	N
F029109	Metagenome	189	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209354_1000207416	F029109	GGAG	MAFKATKGQGSFRIEVEPYELKNLISTLNKLDKETQGRVRDAAQPLSKRLAGQLMMFGGSSPTPQTKLVLESMLTPRDRLIHVDLGGPKKVGRPYGGRPSKSGKGKNVGRSAASAGALLWGSEYGSHAGVDTAGRKYTNRFKAPANKSGYWINNAVDYYTPIVAKEYIAVVKGIINDLRL
Ga0209354_100020743	F010982	GGAG	MVRLSREDEIIAHTAGLARESRYGSNPKGIKERGNFHNAVVIHSEAVGAEMAVAKYFGVEDFVPTVNTFKNEPDVIALGVPIEVKQTPHKRGHLIISEDDRDTDIAVLCVGESPTYYIMGWIPVGVAKRPRFQSAQGGYWVSQINLQPIETLRKSIHANT
Ga0209354_100020744	F000403	AGTAG	MEATAMSGPIEIINPRTMTCTLMEDGEIIATYKVEQCDKCSKLVKFDDFGYQKGYGGEKIIWFCAECR