Scaffold Ga0209354_10001158

Overview

Basic Information

• Taxon OID: 3300027808
• Scaffold ID: Ga0209354_10001158
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.DD (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11648
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001915	Metagenome / Metatranscriptome	617	Y
F004695	Metagenome	427	Y
F017628	Metagenome / Metatranscriptome	239	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209354_1000115812	F017628	AGG	MATYDIAALKEDLPTAKDLAQFVYDKTSIALDLVGKPKEEQYQVAKNALEGKKIPTEFQTDLNPYIDRKELIPADEKRILPPRSKDLPDEGSQVHFFGATNMPHPSDPQSDKKVQINFRKYDNGVITLRQRRNHFSGDGSIGASCYWRTHQQVWSEAT
Ga0209354_1000115816	F001915	N/A	DVDDIVELADSVFGMEADGILTRDRNVFRKNVTITATVQLFDKGKEFLAVCRPVDKSVDNLLAYCWFDRGGYTTYANEEISNAKFHHVDLSLPVRQRVKLIHEMIDQHILWAHSWGIPVICSTSIRSEHDGFMRIHKKRGFTTNGSYAWIRTENAIKGLT
Ga0209354_100011588	F004695	AGGA	MLDRQNIIVEYIEAPAGNKGIVFQVAHEVYLKMVDYLRLTQAKNTFNRLSDYHYLNIAVSNSTEPIRGIDYIHPVVTPGVDYATAIITKCLMPNGKVNFEFERFSEMDSEQSNQATEMVKYMINSKNDSYACIRDWAQDSLLHKNGIVMVSPVRDPITQYKEVEGTKDQLRVFETMAAEKGLTVKRQNMRKIDVNLEGVMQEMMTPDDEPGTMQEEVNDAILANTVYRAKYKMTGFSTSVRIKHVAQHYFVCNPTIPNIQDQDFLGFYDPMTIHECKAQFPYVDLEKLAEHAAYGPAGAYQAGALENDLALHARDSTPVPGQGVIASAGADRYSRVIMLTTAWIRKDVDGDGEEEIVEVCFSGSYVLYVKEVDFIPLAAMCPKPITGNFFGYSLAERLVPMQEYATSIARAEMAFAMQASTPRIGVNPEFIDAEEIQRGVSAMFILDRKFDATKHIYEFGAMQGNLAYVQSSMQRFEADKMAMIGMTSPNDVLNPEVMKDGNSGFKLQLAMGPNQLIQDEMVKNCAIGLRDMIYIVWKTLIQYSDDYNIQQLAAICGKGKPFMDAISMDNYEFIDRKLINIDLALGFLSDENRLTRQQLIGQAQQQFGQAMMALDPSVPELFSKIRRPYEDENRLTRQQLIGQAQQQFGQAMMALDPSVPELFSKIRRPYEDTLRVLGVKDVDAYLPTLEEAAKIIQAQAAKGPSAEQQETQSKTDLNKAKTDETIANTLFTQKKAEDIDTDNMFEALAAKRDKLHSVQVD