NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209208_10011909

Scaffold Ga0209208_10011909


Overview

Basic Information
Taxon OID3300027807 Open in IMG/M
Scaffold IDGa0209208_10011909 Open in IMG/M
Source Dataset NameHost-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fd - Sphagnum fallax MG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11094
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (72.73%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Peat Moss → Unclassified → Unclassified → Host-Associated → Host-Associated Microbial Communities From Peat Moss Sphagnum Species From Minnesota, Usa

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009583Metagenome / Metatranscriptome315Y
F012093Metagenome283Y

Sequences

Protein IDFamilyRBSSequence
Ga0209208_1001190910F009583N/ALNPNSQTIVENVALNSLKEMVLGLLLNFSILLEELLISMVYMDVEVMAYSRIFGDGVKVGAPLGTPHLLTPPNGL
Ga0209208_100119097F012093N/AMECQLQMCEVVQKLVSTLLFNSQDLKLSTKDIITILKHTVNITSSALPIPDPHVTVVPSNTLEKHLIGSHVVDGVRNLVISFSMANLVGSPTSDSTFTYQKGAKNISLVDSLLSKGIVDNHSFHKVSHSFLKVVPNERTSITTCLVIGSMSIENDGAHS

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