Scaffold Ga0209208_10005140

Overview

Basic Information

• Taxon OID: 3300027807
• Scaffold ID: Ga0209208_10005140
• Source Dataset Name: Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fd - Sphagnum fallax MG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18303
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (64.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Peat Moss → Unclassified → Unclassified → Host-Associated → Host-Associated Microbial Communities From Peat Moss Sphagnum Species From Minnesota, Usa

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003575	Metagenome / Metatranscriptome	478	Y
F017086	Metagenome / Metatranscriptome	242	Y
F093125	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209208_1000514010	F017086	AGGA	VRNMQNSYGLKRKGVDLSQGPPKRSDVVQIPAVIETPLVPAENTPSSSGWHNNVVLLLDLMMSFLCTVFSWAFPSYMLKFDFSLLFFILFGC
Ga0209208_100051408	F093125	GGA	VALVAYSFGGLVLKSLVVEAHKHVYQRPKNGLDDKVHKCCKTFLKNIKGVVFYSVPNAGGTQSLSNYFIWKHQQINKLKEYATQSKFF
Ga0209208_100051409	F003575	N/A	MYNQINSNTRFNNCVDRFSFPLQQYPVHDLNPTCNSNNPNLTIIFFHGIAFGTNDEWKETWTTRPTNDREECICWPEKWLPEDLNNNVRILSLSYDSNIVGSVHNDVTEIGKNLIQSLIANSRWDNLLYLWTH