Scaffold Ga0209985_10086808

Overview

Basic Information

• Taxon OID: 3300027806
• Scaffold ID: Ga0209985_10086808
• Source Dataset Name: Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel6S_1000h metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1637
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location

• Location Name: USA: Ohio, Lake Erie
• Coordinates
  • Lat. (^o): 41.69957
  • Long. (^o): -83.2941

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005050	Metagenome / Metatranscriptome	413	Y
F070850	Metagenome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209985_100868081	F005050	N/A	FTKMACVSYCDTSLLEHDLVLCNEYKLGGVSAIIVGSCGTELVDPSDNVEVEALLNAGTARMISDIRFALPAGSPITVDSPIGCGTSIRINEDRTATLYDANVTDGNSIFWNDVNNRRISWILAYMCDSGKVIYITAPVGITTSANFILPEQNNELQRYEVTFSWRNKNIPAQYDAPAGIFN
Ga0209985_100868082	F070850	N/A	MTHLLAYSTNPIQSITPSTGVVLLAFGKVQYYWAAYNLAFSIKKFNPSISIALIVDDKGKAISQCNELADLIDVFADIAPEDIYTNNKLDPGKLKVKLYDYLPFERNLYLDVDAVALKDIQPMIEELAQSGKDYISHCVGYHTIDKGRDFKEMQWAWADKMWKHFELDADTVMPAINSSMQWIVKGKKAKAIYTTAQDLYLNNPIELKDLRMKWGGSQPDELYMNVALAIHNVDPALKKYEKIKTSEGGMIHFAMTRGLTFQEITQHYYLQSYYGGAGFTPNFYIDWLDRMLKADHQAIGRRHIYYINRITQHKFADGKR