Scaffold Ga0209985_10013203

Overview

Basic Information

• Taxon OID: 3300027806
• Scaffold ID: Ga0209985_10013203
• Source Dataset Name: Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel6S_1000h metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5539
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (12.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → Citrifermentans → Citrifermentans pelophilum (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location

• Location Name: USA: Ohio, Lake Erie
• Coordinates
  • Lat. (^o): 41.69957
  • Long. (^o): -83.2941

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011473	Metagenome	290	Y
F016922	Metagenome	243	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209985_1001320311	F011473	N/A	MNWKKYITDPATNRPKRGAISRIAALLGTHYNCVKRMFDGIWKPSEHEAIHLRAIVASRTNLAPKKRCDAGKKRAAYRKRAVAKSGAVPPQLKALRSAKNTARK
Ga0209985_1001320315	F016922	GGAGG	VSAIRINSRAIQCVADAEGATEYVVRYGGRDFIVTAHSRYDAEEAAEYYRTDKPDAAQPELLP