NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209985_10001364

Scaffold Ga0209985_10001364


Overview

Basic Information
Taxon OID3300027806 Open in IMG/M
Scaffold IDGa0209985_10001364 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel6S_1000h metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)24133
Total Scaffold Genes32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (12.50%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location
Location NameUSA: Ohio, Lake Erie
CoordinatesLat. (o)41.69957Long. (o)-83.2941Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029664Metagenome / Metatranscriptome187Y
F031356Metagenome182Y
F054610Metagenome139N
F091433Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0209985_1000136421F054610N/AMTLNQIIKKLIEIASGHKMVRTAKHVKAEDFIVFDYKDVEYPAVWYTLNTSSITGKEKTYQILVTIADIHHVENMDELEMQSDCEQIGHDLLAQVGWNLQEWVMERSFNFEYFRQGQEDILAGVTFELSLKLPIIYNACQVPSDYELPNGNFVYINTNRFMTIADFIVGAGQPMEQGDTEYQDNQLTIAPFVFIDGILQTYVVRSDRRYITHNATTKTITINGGVNEGENIRILL
Ga0209985_1000136426F029664N/AMPEWLKRLTKTDIRNSLAIIIVVGSFLLLYLLQVKPIPEQNHDLVLTAGGFIFGGALAGVVGYYFGATKTDKKHDTEG
Ga0209985_1000136427F031356N/AMTPKDKEMHFWAGVWVSFAALILFKALNVQYCWLYVLCAVLAAAIGKELKDVLDYGKFDWRDAVYTIVGGMSGFILSFF
Ga0209985_100013647F091433N/AMNWNKITVKQYQDIFPIINDDNLSDLDKLVKIICILTGYTEDYIDSWPIDKLNEYRHLFEFDHKKEARKRVKVNGRYYRFNWEINKLKAARYIEAKTFTGEGLFQNLHKIMASCVIPQRKIAFFYFDKKYNAADHDKYATDLLDAPFPFVYNACVFFCQLLMKWIDVTLSYSGELKGKMTESQIAALKESLQGITDGFIVRPLSQISSE
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