Scaffold Ga0209985_10000710

Overview

Basic Information

• Taxon OID: 3300027806
• Scaffold ID: Ga0209985_10000710
• Source Dataset Name: Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel6S_1000h metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 35305
• Total Scaffold Genes: 57
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (15.79%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (44.44%)
• Associated Families: 9

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location

• Location Name: USA: Ohio, Lake Erie
• Coordinates
  • Lat. (^o): 41.69957
  • Long. (^o): -83.2941

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000847	Metagenome / Metatranscriptome	861	N
F003459	Metagenome	485	N
F006105	Metagenome / Metatranscriptome	381	Y
F007748	Metagenome / Metatranscriptome	345	N
F007855	Metagenome / Metatranscriptome	343	N
F009318	Metagenome / Metatranscriptome	319	Y
F024098	Metagenome	207	Y
F044982	Metagenome	153	N
F075765	Metagenome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209985_1000071021	F009318	N/A	MRRFLLLFLLTACTNNRPWKVIEVRPKGDACEYVLSRSNGFGPQVKNITAKCGKYRLFQTINPKSK
Ga0209985_1000071028	F003459	N/A	MNHLVTIPKSDISKADIADIATGLILRIEEGEVNPIAAHVRLKAVVKALEQVLKATEDIVRDEAEKHGKTFSAFGAEIQVKEGALTPDYTHDQVWSDLQASMKAREELLKMAFRNAGKATVYDESTGEAVPVCPAKGTKPSIAVTFKAS
Ga0209985_100007103	F075765	N/A	MTLDSNSKHYLVHALWIVILLFSLQTCMQERERRKEKEAFLEAVQDSAVHYKKVGDDLYAQNALRSLTIDELKRSNVNGKAEVKKLTKRLSEAKAFVDILVVHDTIRSVIVRNDTIPGYFSYWDSCLALSVANDSITYQLAPLSLQLVQHRYGDMVVASAKVDGCGVVTKISGFSVAPPKKKWYENPVLVGILGFTAGALAISR
Ga0209985_1000071036	F007748	AGTAG	VNLLETTIIGTVSAIVGGAVAWLTRGRFQADSLQVKQAQAVLAMWQETAEAQKKELTELRNEIVSLRERIELLENTIQTLEAENATLKSQR
Ga0209985_1000071042	F000847	AGG	MSWIKIKQALLALANAHPQVNSFGTGDPLAIGTDNTINLRTPSRERIVYPLVFADVQSASTDLGSLALTVGVYFSDRVESIATMGGVVSGSPTLGWQDNEDEVLSDQLQIAQDFISALTNDPTQEWTLSTSVSLTRFVESRDDRTAGWVATLSFQLPYSHSVCEIPS
Ga0209985_1000071046	F006105	AGG	VIYLSPNTTNTIVVTWTQRASTGDRYILRLTNIAKNATTDFTLLKSANLSSYTNRYDKFQIAVGPLETGSYKYEVYDTSSTISAAVAVVETGLAYVQVVSLTFNTYANSIQYTVFGASDERVFDSTFDPSFA
Ga0209985_1000071054	F024098	N/A	MSISVLSGSPLVATPVYNKMLFKVSGSLIAQPNYRYVCDVKNPAGTTLARLKCDKLPTTNFGFFDVQKVVETLVAPTAPTLTQTGFVDHSGFYSGYRLDFTQEYGNTPSVTGATTTVSGVMAFAGNLEQLELAGWSGGLYFPAGGGFADAVSRSLATNVRRTVYSDSYGWLCQGVGSGFANTQNIIATVTYYTAGGASARTYNVSIGSASGSTIFRFGAGPLNITALTSGQCSDGSAGSVNFPTAEGSYYTIFFADDGGNGTVPFTYVIGPCQRFDSIPVHFVNKYGGIDSYTFTMKNRKRANIQREVFGYNSDVYATTTYNKVWAGSFDFVYALNSDWLTDAESEWLIEMVRSGYVWLELGGTLVEAVVNANQYQFVTRRNDRLTQLQIEVAVAYDNNIL
Ga0209985_1000071055	F044982	GGA	MEFDVFVGGSGKKLTDFQKQALPDFGVNLADGAIDNKSYAVVKKWLEGVITLAKQNLANSGAIASDSLSASIDFEPITLTDTSFVVAIVANDYWKFVDLGVKGAVSSSRAPNSPFQYRDKRPPIRPIQEWIAFKTIPLEGRDKKAANRSFAINIANKIRREGLRATNFMSNAATKEMVDVLTENIAEVLGKSISVATVR
Ga0209985_1000071057	F007855	N/A	DTTDEKKLVQNLHRIMATLCREGGFLGYFPKKYDGASHQERAELLKAHAKIGDVWGVVSFFLLSSESYLKVLSDYSRHLTKGMQGQ