Scaffold Ga0209229_10200238

Overview

Basic Information

• Taxon OID: 3300027805
• Scaffold ID: Ga0209229_10200238
• Source Dataset Name: Freshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 894
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Sandusky Bay, Ohio, USA
• Coordinates
  • Lat. (^o): 41.474889
  • Long. (^o): -82.854137

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001019	Metagenome / Metatranscriptome	804	Y
F001781	Metagenome / Metatranscriptome	635	Y
F034924	Metagenome / Metatranscriptome	173	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209229_102002381	F034924	GAGG	LTTYRVFGARYQNYYTIVSADDEYQAAEIANSRPSNEWNLIPIDDEIEATDVFLDEDTSIDLQLNI
Ga0209229_102002382	F001019	AGGAGG	MSNYGPSLEILEVAYEVSPGGVRTFEVYDKGDNYDIMDIPIYETESLTEAVQYCYNLDKDFIVRTYAEWEMREMLDNL
Ga0209229_102002384	F001781	N/A	PEDKDKLNKCLEILDTTDLGLSMVWLWTWSTINNILDDETYKAKVTQDQMWDNLCEAVEAGHGFSLEYGAEQHQDDVLEWMMNRDYIVDTMFEDDEEEEDADE