Scaffold Ga0209229_10176809

Overview

Basic Information

• Taxon OID: 3300027805
• Scaffold ID: Ga0209229_10176809
• Source Dataset Name: Freshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 958
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Sandusky Bay, Ohio, USA
• Coordinates
  • Lat. (^o): 41.474889
  • Long. (^o): -82.854137

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000263	Metagenome / Metatranscriptome	1424	Y
F000868	Metagenome / Metatranscriptome	853	Y
F013184	Metagenome / Metatranscriptome	273	Y
F063705	Metagenome / Metatranscriptome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209229_101768091	F000868	N/A	MIIDAEYSYIGEQLVEDWVNSNLNEGQLYADYCFAEMCESNYLKGRFNLFYDLNAGDQYYIEWDEEL
Ga0209229_101768092	F013184	GGA	MKKYPFVIRLEGAVMADNEKQAHYKINQHLNDLGDVDSARYDLNWPDVSWDMEYDLC
Ga0209229_101768094	F063705	GGAGG	LTKSSVFLEYMKLHLISLNQDWEAAKNGEPLAEDEYDPSDDYFEGAIAATEHLLSVATDIMNSTSERYE
Ga0209229_101768095	F000263	AGG	MNQEDIGLPPHLQRLVNAGVSGLDIMHGELKNLMLMAEQELAFAIEREEQTEEAMDSMLRTEAEGVLDTLVSLYDL