Scaffold Ga0209229_10150423

Overview

Basic Information

• Taxon OID: 3300027805
• Scaffold ID: Ga0209229_10150423
• Source Dataset Name: Freshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1049
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Sandusky Bay, Ohio, USA
• Coordinates
  • Lat. (^o): 41.474889
  • Long. (^o): -82.854137

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014089	Metagenome / Metatranscriptome	266	Y
F037494	Metagenome	168	N
F058101	Metagenome / Metatranscriptome	135	Y
F091606	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209229_101504231	F037494	N/A	MKIKPTIEDKVLAHTVALERIAQIQGQPDASSRYDRQLGFHDYVAQVAESIVAEILVARYLGYVDFDPRGSQFKKTADVGSFIEVKWTRYESGQLIIYENDRQTDVAVLVVGTSPNYRLAGWIPVAMAKRPKYKNSKQPTWWVDQKN
Ga0209229_101504232	F014089	N/A	MSDLIEIIYPQLMTAKLLQNGEVIAEYKIEQCDSCEKLKKLDAFGYTKGQGGEKLTWLCGDCR
Ga0209229_101504233	F058101	AGG	MDENLKKIHTSTDGKIYSFSGYGGVSNCSDCDDFTQVNEYDREDGLVVFFCKKCENRLHL
Ga0209229_101504234	F091606	N/A	QSGIPSLGSSMDEIKKQLGGELVAEAPQCSHGHRIFKTGEAKTGKAWGGWFCVEKAKADQCTPLWYVLASDGKWKPQV