Scaffold Ga0209229_10075285

Overview

Basic Information

• Taxon OID: 3300027805
• Scaffold ID: Ga0209229_10075285
• Source Dataset Name: Freshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1514
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Sandusky Bay, Ohio, USA
• Coordinates
  • Lat. (^o): 41.474889
  • Long. (^o): -82.854137

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012108	Metagenome / Metatranscriptome	283	Y
F037567	Metagenome / Metatranscriptome	167	N
F064189	Metagenome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209229_100752853	F037567	AGG	MEWISFFGPRRPINGQKVYYFGEYIGVWQGRYEIHRDDPVSEHVLICEETPGIVDSMDAPWWMPYEGQPKPKRPETDYPKDYPHG
Ga0209229_100752854	F064189	AGGA	MAKNFKDLISADPKTMTREQAMIYVINFFNSRMMTTSAKHVSKAKELIGLHEISVSELVNKYVELVYQNS
Ga0209229_100752855	F012108	AGGA	MITVKLTVREAMNLATSWAYNNDAELYHKIVNALENALDMNQNRTVTITGGMSLDNRIYCIKSIRHYSGWGLKESKDWTDVLVGGWKGDRFIPAIPGTRNSITLSTPEAAENLLRDLKEKGCEGFIS