Scaffold Ga0209229_10067304

Overview

Basic Information

• Taxon OID: 3300027805
• Scaffold ID: Ga0209229_10067304
• Source Dataset Name: Freshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1604
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Sandusky Bay, Ohio, USA
• Coordinates
  • Lat. (^o): 41.474889
  • Long. (^o): -82.854137

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000311	Metagenome / Metatranscriptome	1326	Y
F001043	Metagenome / Metatranscriptome	794	Y
F013892	Metagenome / Metatranscriptome	267	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209229_100673042	F000311	GGAG	MYFELTAPSQVAFARAIWDAEIIGLDPEEMGSLTFNIGTGSIEKVTRLREKHNLSLIHESDSELTGYRRN
Ga0209229_100673043	F001043	AGGAG	MADTYQDGFTDGARWAREEITEKLREIDIMDIDSWLLDKLADMIEGGNL
Ga0209229_100673045	F013892	AGGCGG	MGDRANFAFKQSDTNTIVLYGHWAGHQMLNNLAMAVDKARGRWADESYATRICISQLVGSEWNTETGWGLQVNSISDNEHKIPVINWGTQTFSLHEEAP