Scaffold Ga0209229_10060450

Overview

Basic Information

• Taxon OID: 3300027805
• Scaffold ID: Ga0209229_10060450
• Source Dataset Name: Freshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1694
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Sandusky Bay, Ohio, USA
• Coordinates
  • Lat. (^o): 41.474889
  • Long. (^o): -82.854137

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017972	Metagenome	237	Y
F023834	Metagenome	208	Y
F093528	Metagenome	106	Y
F095162	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209229_100604501	F017972	GGAGG	VRTRHLQLVTHEHSDTIGKRENVSSPYGPVNPGSTTLVSQRILRENQLRQLSELLSSLENVVESLNYKSFTAYDTLVTATEGVRVALSNIVTEEAGTDIV
Ga0209229_100604502	F095162	GGCGG	MSDDKRLASAAKAAVYYRNYRRARDRALIKLSHLHPDDYKELLEKEKVSDEQEGKTWIDLNGSAASPRTVARAKARGITLTQTNTDQGNDGGKA
Ga0209229_100604504	F093528	AGG	VSEETTTHVITVVIQAGQKWNKVELFDFSGDDPTLLAAGEASNWRTALGEALSKISLSSELPEKTINDIVKEDTEGKGENE
Ga0209229_100604505	F023834	AGGA	MNKEYWQAKADLCRDLALIQIQDEETEKEAGMNLMRMTYALSMIDTYSEGKGE