Scaffold Ga0209229_10038508

Overview

Basic Information

• Taxon OID: 3300027805
• Scaffold ID: Ga0209229_10038508
• Source Dataset Name: Freshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2111
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Sandusky Bay, Ohio, USA
• Coordinates
  • Lat. (^o): 41.474889
  • Long. (^o): -82.854137

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000263	Metagenome / Metatranscriptome	1424	Y
F000852	Metagenome / Metatranscriptome	860	Y
F000868	Metagenome / Metatranscriptome	853	Y
F019324	Metagenome / Metatranscriptome	230	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209229_100385082	F000868	AGGCGG	MLREVGEYPVLPNTSFLENENQMIIDAEYSAIGEQLVEDWVNSNLNEGQLYADYCFAQMCESNYLKGRFNQFYDLKPEDQYYIEWDEEA
Ga0209229_100385083	F019324	GAGG	MLGYVLEDLDNMIDAVAAAITTVNSDDDPWLHGSLSKTQEFLQGLWAEGYFD
Ga0209229_100385085	F000263	AGGAG	MMNAEDIGLPPHLQRMVNYDINGLDIMHGELKNLMLIWEKELEKAQAIEDESEEAMDSMERKYCEGFLDALTALYKLTYDLSFAIGASNDN
Ga0209229_100385088	F000852	AGGA	MTTKREYLKQQGITVGARGRFSGAAKVAIDEAVKKGVTFTPEAVAKKAK