Scaffold Ga0209229_10037979

Overview

Basic Information

• Taxon OID: 3300027805
• Scaffold ID: Ga0209229_10037979
• Source Dataset Name: Freshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2125
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Sandusky Bay, Ohio, USA
• Coordinates
  • Lat. (^o): 41.474889
  • Long. (^o): -82.854137

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028744	Metagenome	190	Y
F031377	Metagenome	182	Y
F039000	Metagenome	164	Y
F045551	Metagenome	152	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209229_100379796	F045551	AGGAG	MTEQRELELLRPYVAACGEFVTKNAALEKHLKAIDRLLLDVLMGDIDPMQAMINRQKIKDEFDEQS
Ga0209229_100379797	F028744	N/A	MHEFLYECDELGLALKCFFEYEPAEVGSVEPMSGMKLEPDYPEVWTLVSVFLPNSQVDLSGVLHPDVIFRIEQDAPIYFEEMRRETSYD
Ga0209229_100379798	F031377	GGAG	MITNAHEFTSVSSTNGRVTPFNTGKVQIGLMYQPPPPEMTSSEELVQAALMGWSSIHRPVPLWPVTLGSLIVGFLIILTVG
Ga0209229_100379799	F039000	AGGA	MGKLPHTPDKQIEEIMDNAQTLLNFCGNTFAKPSEAWYACLVSAAILTAELDVPVEVFLEGFEQAYKDAMKAKAKGASYDH